GWAS summary data tables

Provided are data from a meta-analysis of SARS-CoV-2 infection with Omicron variants vs. controls without known infection in of 151,825 cases and 556,568 controls performed with METAL on REGENIE GWAS results.

Variables in the datasets

• chrom - chromosome
• pos - position GRCh38
• rsid - rsname for SNP
• ref - reference allele
• alt - alternative / effect allele
• neg_log_pvalue - negative log P value
• beta - effect estimate
• stderr_beta - standard error of the estimate
• alt_allele_freq - frequency of the alternative allele

Acknowledging the data

When using data from the downloadable GWAS scan please acknowledge the source of the data as follows:

GWAS data for the meta-analysis of SARS-CoV-2 infection with Omicron variants vs. controls without known infection on permanent tooth eruption has been downloaded from
https://www.danishnationalbiobank.com/GWAS.

In addition to the above acknowledgement, please cite our manuscript:
Geller F et al.: “Central role of glycosylation processes in human genetic susceptibility to SARS-CoV-2 infections with Omicron variants”
www.medrxiv.org/content/10.1101/2024.11.21.24317689v1

Downloading the data

Please find the downloadable GWAS scan here:
https://biobanks.dk/GWAS/summary_stats.gz 

Disclaimer

These data are provided "as is" and without warranty, for scientific and educational use only. The authors assume no responsibility for errors or omissions. If you download these data, you acknowledge that these data will be used only for non-commercial research purposes; that the investigator is in compliance with all laws or regulations and institutional policies regarding human subjects and genetics research; and that secondary distribution of the data is prohibited. The authors shall not be held liable for any use or misuse of the data.